I find hylemorphism to be very compelling, I really do, it recongnizes the emergent principals that exist in nature, particularly in biological systems. However I always get hung up on this question. If the soul is what is needed to make something alive and to animate it, how than would that be true if abiogenesis would be found to be correct?
In the generation and corruption of natural things, substantial forms are educed out of the potentiality of matter. For example, if we set fire to a piece of wood, the wood changes to ashes, it is no longer wood. A substantial change occurs here. The wood takes on the substantial forms of certain elements or the substantial forms of mixtures of elements such as minerals. The substantial form of wood recedes back into the potentiality of matter. The matter of the minerals or elements of the ashes could in turn be used by a living tree which if the tree died this matter would have the form of wood again. Philosophically, matter is potentiality, i.e., it is in potentiality to be informed and to receive all kinds of forms.
God created matter and form together, matter does not exist without form and material forms do not exist without matter. If abiogenesis was found to be correct or possible and this may involve only the very lowest life forms, I don’t see how this would present a problem for hylemorphism or the soul as the animating principle of life in non human living things. In this case, the soul, the substantial form of living things, would be educed out of the potentiality of matter upon the action of some agent and the action of the substantial forms and elemental powers of the elements which God created the elements with. Again, in this case, the soul is a form existing in the potentiality of matter, not having actual being but potential being which God placed in matter upon creation of the world. Now, on supposition that abiogenesis is correct or possible, we are not going to get life from just any elemental or inanimate matter or just any combination of them but from certain elements and certain combinations of them which science I believe calls organic compounds or something of the sort and there also has to be the right environment and external conditions weatherwise. St Thomas Aquinas was actually of the opinion that less perfect animals such as worms could be generated by putrefaction which according to the dictionary I"m looking at presently putrefaction involves the inanimate organic matter of dead things. However, he also held that plants or animals generated from seed could only come from seed.
Interestingly, in the creation of the world by God in the book of Genesis, it is written “And God said, let the waters bring forth” the various species of marine life and the birds. Also “And God said, let the earth bring forth” the various species of plant and animal life. At the first beginning of the world, Aquinas explains this accordingly “Not as though the power possessed by water or earth of producing all animals resides in the earth and the water themselves, as Avicenna held, but in the power originally given to the elements of producing them from elemental matter by the power of seed or the influence of the stars.” This is similar to St Augustine’s seminal virtues or reasons. For Augustine’s interpretation of Genesis 1 is that God in the beginning produced from elemental matter the various species of plants and animals not in act but virtually, i.e., in their causes and that God placed seminal virtues (or powers) in the elements to do this. According to a ‘surface’ reading of the text of scripture, other holy writers and fathers of the Church interpret the work of the 3rd, 4th, and 5th days as God producing from the waters and the earth the various species of plants and animals in act, i.e., as already constituted in their various species and not just virtually.
Also people may make a similar argument about a computer carrying out processes due to its form. It’s not alive but functions, moves internally viva its processes, and consumes energy. I’m not trying to be a jerk or devils advocate, it just a question to clear some doubt in my head.