Yes indeed, Creation as we know it did come from pre-existing formless matter, but according to the Bible, all of it came from God.
John 1:3
All things came into being through Him, and apart from Him nothing came into being that has come into being.
I believe that this verse was written to declare by Whom creation occurred, not how.
Witness these other translations of this verse:
All things were made through him, and without him was not any thing made that was made. (English Standard Version)
All things were made by him: and without him was made nothing that was made. (Douay-Rheims)
Hubler says this (which gives cover to both sides and is admittedly getting beyond my understanding):
The punctuation of [John 1:3] becomes critical to its meaning. Proponents of creatio ex materia could easily qualify the creatures of the Word to that “which came about,” excluding matter. Proponents of creatio ex nihilo could place a period after “not one thing came about” and leave “which came about” to the next sentence. The absence of a determinate tradition of punctuation as New Testament [Greek] leaves room for both interpretations. Neither does creation by word imply ex nihilo (contra Bultmann) as we have seen in Egypt, Philo, and Midrash Rabba, and even in 2 Peter 3:5 where the word functions to organize pre-cosmic matter. (Hubler, Creatio ex Nihilo, 108)
Hebrews 11:3
By faith we understand that the universe was created by the word of God, so that what is seen was not made out of things that are visible.
The second example above from Hebrews is about as clear as you can get. Creation came from what was invisible. Matter has mass and takes up space, even if it is not visible to the eye. Pre-existing matter would have the same characteristics.
Just because something is “not made out of things that are visible” doesn’t mean it can’t be made out of something invisible. Colossians 1:16 clearly speaks to invisible things:
For in him were created all things in heaven and on earth, the visible and the invisible, whether thrones or dominions or principalities or powers; all things were created through him and for him.
So, I say to you, why not just be content with the Biblical fact that God created all things, including pre-exising matter, it is all from God, the Creator.
I like how you’re turning my words back at me.
Revelation 4:11
Worthy are you, our Lord and God, to receive glory and honor and power, for you created all things, and by your will they existed and were created.
I do believe that the Lord created all things. As I’ve posted elsewhere, the original meaning of “create” is to make something grow.
Stanley Jaki states:
In its basic etymological origin
the word creation meant the purely natural process of growing or of making something to grow. This should be obvious by a mere recall of the [Latin] verb crescere. The crescent moon [derived from crescere] is not creating but merely growing. The expression ex nihilo or de nihilo had to be fastened, from around 200 A.D. on, by Christian theologians on the verb creare to convey unmistakably a process, strict creation, which only God can perform. Only through the long-standing use of those very Latin expressions, creare ex nihilo and creatio ex nihilo, could the English words to create and creation take on the meaning which excludes pre-existing matter.
Stanley L. Jaki, Genesis 1 Through the Ages (Royal Oak, Mich.: Real View Books, 1998), 5-6.
The Bible came into being for our benefit, for humans. It is not for the rest of the animal kingdom or angels. When the Bible says God created all things, that is the truth that God wanted us to understand. Why would you deny that it is the whole truth?
I fully believe and understand that the Lord made all things grow as the original texts state. I will NOT deny that whole truth! Take care.