Atoms are composed of electrons, protons and neutrons.
And…? Is that a “trick question”? Did you expect the answer “Atoms are composed of electrons, protons, neutrons and
substance.”…?
But it isn’t so. In this case the isolated atom
is a substance. It has accidents. For example, energy. When it is hit by a photon, energy increases, but the atom stays. Aristotle would probably say that it is an accidental change. If nuclear fission or fusion happens, we would have something that he would call a substantial change: we no longer have the same atom.
As you can see, talk about substance and accidents (as such) is not even that incompatible with materialism.

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MPat
Yes, this is a trick question that Muze probably suspected as such since he didn’t answer my post even after Verbum Caro in post 83 challenged him to do so.
I happen to agree with your observation that separating the substance from the accidents can be tricky. And it is the trick I was playing, namely, when you think about matter at its most fundamental level, it seems to disappear and become itself “substance”. For example:
Let’s consider the lowest atomic state of hydrogen. It consists of an electron and a proton together occupying a volume 10^-10 meters in diameter. The electron is a “point” particle (having a diameter too small to measure) in orbit around a central nucleus consisting of a single proton that has a diameter of 10^-15 meters. Hence, the diameter of the H atom is 100,000 times the diameter of its nucleus. Even though the entire H volume is filled with “space” it still exhibits materiality. And even more amazing the nucleus itself consists of three quarks which are also "point’ particles, which makes H, this ridiculously small lump of “matter”, 99.999999… % space.
And yet, Muze wants us to believe that science can find no place in our existence for a "non-material "substance. However if one assumes that the space that “matter” is immersed in is a spiritual substance and matter is composed of a some other kind of “material” substance then we could answer all those questions that science can’t and never will without conceding the existence of God and the spiritual substance.
The question then is: how does one distinguish the spiritual substance from the material substance, especially since I contend that the spiritual substance has the characteristics of space?
I contend that the material substance, the stuff that is formed into electrons and quarks, also has the characteristics of space. The spiritual is distinguished from the material simply by assuming that the spiritual substance can be modeled as continuous space and the material substance can be modeled as discrete space. This spatial bifurcation is easily explained mathematically.
What we end up with is the foundation for hylomorphic duality and the tool for explaining all those things like mind, soul, qualia, free will, transubstantiation that science doesn’t, can’t and never will explain but which should be observable to anyone with a functioning mind.
Science merely describes at the explicate level that which God creates at the implicate level.
Yppop