Here are a list of papers that report the work referred to above:
The MHC complex:
Ayala, The myth of Eve, Molecular biology and human origins, *Science *270, 1930 - 1936
Bergstrom et al, Recent Origin of DRB1 alleles and implications for human evolution,* Nature Genetics* 18, 237 (1998),
Screuder et al in The HLA Dictionary*, Tissue Antigens* 65, 1 - 55
Gyllensten, Sundvall and Ehrlich, Allelic diversity is generated by intraexon sequence exchange at the DRB1 locus of primates,
PNAS 88, 3686 – 3690 (1991)
Beta-globin:
Harding et al, ‘Archaic African and Asian lineages in the genetic ancestry of modern humans’, Am J Hum Genet 60, 772 - 789
Apolipoprotein C II:
Xiong et al, ‘No severe bottleneck during human evolution; evidence from two apolipoprotein C II alleles’, Am J Hum Genet 48, 383 -389
**
Nuclear genome**:
Rogers and Jorde, ‘Genetic evidence on the origin of modern humans’,
Hum Biol 67, 1 - 36, show that a modest bottleneck of 10,000 individuals is consistent with the data.
Takahata et al, ‘Diversion time and population size in the lineage leading to modern humans’,
Theor Popul Biol 48, 198 - 221
Zhao et al, Worldwide DNA sequence variation in a 10 kilo-base noncoding region on human chromosome 22,
PNAS 97, 11354 – 11358 (2000)
mtDNA:
Takahata, ‘Allelic genealogy and human evolution’, Mol Biol Evol 10, 2 - 22;
Y-chromosome data:
Hammer, ’ A recent common ancestry for human Y-chromosomes’, *Nature *378, 376 - 378
Pritchard et al, Population growth of Human Y Chromosomes: A Study of Y Chromosome Microsatellites, Mol Biol Evol 16,1791 – 1798 (1999)
LD:
Tanesa et al, Recent human effective population size estimated from linkage disequilibrium,
Genome Res 17, 520 – 526 (2007)
Hayes et al, Novel multilocus measures of linkage disequilibrium to estimate past effective population size, *Genome Res *13, 635 – 643 (2003)
X-chromosome:
Yu, Fu and Li, DNA polymorphism in a worldwide sample of human X-chromosomes,
Mol Biol Evol 19, 2131 – 2141 (2002)
Microsatellites:
Zhivotsky et al, Features of evolution and expansion of modern humans, inferred from genomewide microsatellite markers,
Am J Hum Gen 5, 1171 – 1176 (2003)
**
General studies**:
Cavalli-Sforza and Feldman, The application of molecular genetic approaches to the study of human evolution,
Nature Genetics 33, 266 – 275 (2003)
Jorde, Bamshad and Rogers, Using mitochondrial and nuclear DNA markers to reconstruct human evolution,
Bioessays 20, 126 – 136 (1998)
Liu et al, A geographically explicit model of worldwide human settlement history,
Am J Hum Gen 79, 230 – 237 (2006)
J D Wall, Estimating ancestral population sizes and divergence times,
Genetics 163, 395 – 404 (2003)
Hawks et al, Population bottlenecks and Pleistocene human evolution, *Mol Bio Evol *17, 2 – 22 (2000)
Harpending et al, Genetic traces of ancient demography,
PNAS 95, 1961 – 1967 (1998)
Takahata and Satta, Evolution of the primate lineage leading to modern humans: Phylogenetic and demographic inferences from DNA sequences,
PNAS 94, 4811- 4815 (1997)
Yu et al, Low nucleotide diversity in chimpanzees and bonobos,
Genetics 164, 1511 – 1518 (2003)
Alec
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