Actually, I think Dinnish D’Souza explains this far better than I could… paraphrasing from him, it was the pre-socratics who first thought up the concept of a disenchanted universe, where Ra didn’t drive his chariot of fire across the sky once a day… but they were ultimately suppressed by Socrates and Greek Pagan theology.
As to Judeo-Christian theology, there is a reason the greek term used to describe Jesus in John 1 is logos, from which the word “logic” is derived… it is a basic precept of Christianity that rationality itself is a reflection of God’s nature. This is why Augustine exclaimed in his confessions that all creation points to and reflects the Creator. And, as Alfred North Whitehead wrote in
Science and the Modern World, “Faith in the possibility of science… is an unconscious derivative of medieval theology”
It was Robert Grosseteste, a Franciscan Bishop, who first proposed that scientific knowledge be gathered through an inductive, experiment based methodology.
Indeed, and that is because the rationality of the universe is subject to the rationality of God. God can change it’s rationality at any time to allow for Miracles. In other words, God is not bound by the laws He fashioned for His creation.
Again, Dinesh D’Souza does a far better job explaining the possibility of Miracles than I can on the fly (and I want to go home, so admittedly I’m shortchanging you):
books.google.com/books?id=vVXf2PV8pyQC&pg=PA92&lpg=PA92&dq=Dinesh+D’Souza+%22universe+is+rational%22&source=bl&ots=GEJCvj4j0B&sig=F1BF2O6kRcbviq3aU-xggHic02Q&hl=en&ei=wYfFTtnqFMji0QHxpKGYDw&sa=X&oi=book_result&ct=result&resnum=10&ved=0CFYQ6AEwCQ#v=onepage&q=miracles&f=false
Click on the finding for page 179 and read from there. If you haven’t read his book “What’s so great about Christianity?” I strongly recommend it. Dinesh is a prodigious apologist.