Exactly which part of scripture? The genealogy, for example, it is my understanding that the Church doesn’t take them literally.
Humani Generis (Pius Xll, 1950) is referenced a lot in these types of discussions because it mentions polygenesis, but I’m not sure the reference is apt. One of the things that are unclear to me is what is meant in the encyclical by the word “polygenesis”. Apparently the word doesn’t mean exactly the same thing today as it did in the 1950’s. Another thing about HG, is that the reference to polygenesis is not necessarily referring to a ban on the theory, but a warning that the theory isn’t yet developed enough to believe in, and cannot be accepted at that time.
Either way, the Church’s interest is in the soul. The existence of an immortal soul in a homo sapien is what makes a human, according to the Church. So the Church, and the story of A&Eve is concerned with the human, not necessarily the homo sapien. Population bottlenecks and genetics should be able to shed some light on humans and their souls, but they would tell us much more about Homo sapiens in general.