In any event, let us be generous and admit that it is easy for an opponent of Catholicism to think, in good faith, that Peter was never in Rome, at least if he bases his conclusion on the Bible alone. But restricting his inquiry to the Bible is something he should not do; external evidence has to be considered, too.
William A. Jurgens, in his three-volume set The Faith of the Early Fathers, a masterly compendium that cites at length everything from the Didache to John Damascene, includes thirty references to this question, divided, in the index, about evenly between the statements that “Peter came to Rome and died there” and that “Peter established his See at Rome and made the bishop of Rome his successor in the primacy.” A few examples must suffice, but they and other early references demonstrate that there can be no question that the universal—and very early—position (one hesitates to use the word “tradition,” since some people read that as “legend”) was that Peter certainly did end up in the capital of the Empire.
Tertullian, in The Demurrer Against the Heretics (A.D. 200), noted of Rome, “How happy is that church . . . where Peter endured a passion like that of the Lord, where Paul was crowned in a death like John’s [referring to John the Baptist, both he and Paul being beheaded].” Fundamentalists admit Paul died in Rome, so the implication from Tertullian is that Peter also must have been there. It was commonly accepted, from the very first, that both Peter and Paul were martyred at Rome, probably in the Neronian persecution in the 60s.
In the same book, Tertullian wrote that “this is the way in which the apostolic churches transmit their lists: like the church of the Smyrnaeans, which records that Polycarp was placed there by John; like the church of the Romans, where Clement was ordained by Peter.” This Clement, known as Clement of Rome, later would be the fourth pope. (Note that Tertullian didn’t say Peter consecrated Clement as pope, which would have been impossible since a pope doesn’t consecrate his own successor; he merely ordained Clement as priest.) Clement wrote his Letter to the Corinthians perhaps before the year 70, just a few years after Peter and Paul were killed; in it he made reference to Peter ending his life where Paul ended his.
In his Letter to the Romans (A.D. 110), Ignatius of Antioch remarked that he could not command the Roman Christians the way Peter and Paul once did, such a comment making sense only if Peter had been a leader, if not the leader, of the church in Rome.
Irenaeus, in Against Heresies (A.D. 190), said that Matthew wrote his Gospel “while Peter and Paul were evangelizing in Rome and laying the foundation of the Church.” A few lines later he notes that Linus was named as Peter’s successor, that is, the second pope, and that next in line were Anacletus (also known as Cletus), and then Clement of Rome.
Clement of Alexandria wrote at the turn of the third century. A fragment of his work Sketches is preserved in Eusebius of Caesarea’s Ecclesiastical History, the first history of the Church. Clement wrote, “When Peter preached the word publicly at Rome, and declared the gospel by the Spirit, many who were present requested that Mark, who had been for a long time his follower and who remembered his sayings, should write down what had been proclaimed.”
Lactantius, in a treatise called The Death of the Persecutors, written around 318, noted that “When Nero was already reigning (Nero reigned from 54–68), Peter came to Rome, where, in virtue of the performance of certain miracles which he worked by that power of God which had been given to him, he converted many to righteousness and established a firm and steadfast temple to God.”
These citations could be multiplied. (Refer to Jurgens’ books or to the Catholic Answers tract Peter’s Roman Residency.) No ancient writer claimed Peter ended his life anywhere other than in Rome. On the question of Peter’s whereabouts they are in agreement, and their cumulative testimony carries enormous weight.