Again, this is just semantics. I understand what you’re saying, that’s just not the wording I chose. If you prefer to say that the paper would “simulate” logical thinking, that’s fine by me.
But that doesn’t quite work either. Whatever you want to fit in there–“represent”, “resemble”, “simulate”–it’s going to have to do a lot of philosophical work. And “simulate” does not do any better, since it is still smuggling in a mind-dependent notion. The issue is that it still only “simulates” one function rather than another relative to my interests. Its physical structure is incommensurable with our semantic interpretation of it.
The microstructure of a computer is made up of nand gates because philosophers defined the nand truth function, and computer designers found it useful to make such a machine. Logic is not intrinsic to its operations. The wedge is driven in that our minds do not simulate logic; we are intrinsically logical (in spite of our frequent failures).
So before I address your other points, I’d like to ask you a question: Do you agree that it is possible that having a complete understanding of someone’s brain at a given time could allow us to know their thoughts at that time?
I do not.
I do think we can anticipate some people’s subjective experiences (or at least some of them), but I think there are limits to this. We could possibly track what data is entering a person’s nervous system through their optic nerve, say, and predict what is in their visual field. (This would be akin to being able to check the microstate of a camcorder and discern what is in front of its “visual” field.) This does not, however, account for qualia and the way that the presence of such “visual data” in the system amounts to a subjective phenomenal experience.
I think there are further issues when one is engaged in thinking about formal entities. (By “formal entities” I mean universal forms, equations with determinate semantic meanings, formal propositions, rules of logic.) There are two issues with such entities: first, physical systems cannot amount to determinate semantic meanings (by the arguments given in my previous post–the meanings of any physical system are user-relative); second, while such objects are intentional, they are nonphysical since they do not have correspondence in the actual world.
If you agree that thoughts can be predicted, identified, and classified with physical information, it matters little to me if you insist that the thoughts are accounted for by something ethereal. It makes no difference to the way that science is conducted.
I don’t think cognitive science is a very fruitful scientific endeavor, since I don’t think substantial advances will be made in modeling the human intellect (though great advances can be made in aiding it–Wolfram Mathematica, for example). Even if materialism were true, modeling the mind using a computer (in Turing test spirit) would face huge limitations. (I believe the prognosis for materialism overall is worse.) Other research (ie. medical research) I have no issues with.
In fact, we could propose that the thoughts of other intelligent animals are always contingent on some metaphysical entity and our understanding of their thinking wouldn’t change. It is analogous to the fact that assuming numbers exist as Platonic forms doesn’t affect how one does math.
I do not think there are many animals for whom immaterial souls would need to be postulated. I regard just human intellectual operations as essentially immaterial (I think qualia have a material basis, though I am doubtful that methodological naturalism has sufficient conceptual tools to address qualia–but there is also not really a way to modify methodological naturalism, in any case), and I think most evidence points to chimps, dolphins, great apes, etc. falling seriously short of our capabilities.