It is a part of Catholic teaching that intellect is a faculty of soul/mind. This means that we should be able to directly control/process our thoughts. We however know that thoughts pop into our soul/mind meaning that we have no control on them. So thoughts should be part of brain process otherwise we could control/process them directly using our intellect. So the question is how intellect could be a faculty of soul/mind? Another question is if intellect has no power as a faculty of soul/mind then what is the use of soul/mind?
I would say that your conclusion at the end (“So thoughts should be part of brain process otherwise we could control/process them directly using our intellect”) is too extreme. It’s not that we have full control; we have partial control. I think of the mind as a broader thing than what can merely be obtained, or described, by the brain. A metaphor might help.
Consider an equation describing a circle in the xy plane; say, x^2+y^2<=2. This is your physical brain. You can describe objects, or “thoughts”, that are contained in your brain, like “point (0,0)” or “ball x^2+y^2<=1”. If you believe that the intellect is confined to the brain then one really cannot say things much different from what you said. In this view of the world you’re probably right.
But suppose that the mind is broader than that. Suppose that its locus is really the xyz space and its equation is in fact x^2+y^2+z^2<=2. It’s just that when you’re in the physical world your extra dimension collapses to z=0. If your mind is broader than your brain, you have extra degrees of freedom. You can have thoughts like “point (0,0,1)” or “ball x^2+y^2+z^2<=1”, which are more general.
This broader view implies that whatever thoughts you have should be partly apprehended by an observer placed on the xy plane (say, a neuroscientist). Using our little metaphor, if your mind contains ball x^2+y^2+z^2<=1, then it must also contain ball x^2+y^2<=1 in the observable world. An observer would say “this mind contains ball x^2+y^2<=1” and she would be right; but she would miss the fact that the mind would also contain a more complicated thought, ball x^2+y^2+z^2<=1.
Likewise, statement “this mind contains ellipse 0.01*x^2+y^2<=1” is impossible if your mind were the ball described above: point (10,0) would be in the ellipse but not in the brain (the observable part of the mind). Your thoughts therefore induce certain observations in the real world, but an external observer cannot recover your full thoughts from the observations of the real world.
The question now is: what makes one think that our mind is broader than our brain? A neuroscientist cannot possibly document that because she is confined to the physical observations. Can we detect that broadness of the mind?
My answer would be yes. I will just mention briefly two reasons. One is human conscience and the other is human creativity or, if you prefer, human unpredictability.
Human conscience. This is a well-known problem of philosophy, neuroscience, physiology, etc. My point is that human consciousness seems to be beyond the grasp of scientific observation. Modern science documents correlates of thoughts (like brain waves, changes in brain scans, transmission of actions by the nervous system, etc.) but it has failed so far at providing a convincing account of the process of conscience formation and operation. It’s as if conscience is too complex to be explained. So far people have said: “ok, we have not arrived there yet but we will”. I would think we will never arrive there because science can only tackle physical correlates, not the whole object.
Human creativity. Despite known regularities in human behaviour (which could in fact be ascribed to physical limitations to the broader mind), the overwhelming empirical evidence is that human behaviour is unpredictable. All the physical correlates I mentioned above fail utterly to have any predictable power for human decisions at the individual level. Pick a random person on the street, scan her brain in whatever fashion you like, and in the end ask her to draw something in a white sheet of paper (or any other action for that matter). You can eventually do better than a random classifier, but can you be sure about what she will do? Now people will tell me: “ok, we have not arrived there yet but we will”. I have no evidence or suggestion that we ever will.
Another question is whether the mind really needs a physical brain to subsist. If the mind is broader than the brain, the extinction of the brain does not necessarily imply its own extinction; only its observable part will in fact be extinct. Maybe the 3D ball just migrates to a part of the xyz space away from the xy plane…
So, yes, I think the mind is broader than the brain in a mysterious but compelling way.