If substance-of-dog is real, as you say, then changes in substance-of-dog must drive the evolution of dogs. Please cite any paper, from philosophy or science, on how this happens…[snip]…
As I promised

, from an online course in the Philosophy of Nature by my old friend Fr. William A. Wallace ( R.I.P., age 96, died with his " boots on " ).
" 1. Plant Natures
Plant natures – as studied, for example, in botany – are obviously more complex than inorganic natures. Apart from their atomic and molecular parts they are organisms with their own systems and functions to account for. Aristotle was aware that plant organs exercise three basic powers that are required for life processes. These he enumerated as nutrition, growth, and reproduction. Modern biologists would add to these homeostasis, the power whereby an organism maintains its stability while adjusting to the environment in ways that are best for its survival. With this addition we have the four powers required for plant life. Adapting to modern usage, we shall change their names slightly from those used by Aristotle.
I am using graphical aids throughout these lectures that are available to those taking the course for credit. Some of the figures are found in my The Modeling of Nature, published by The Catholic University of America Press in 1996. We enumerate these four powers, with their symbols, as shown in Fig. 4.1 (p. 95 in Modeling of Nature): the homeostasis control (HC), the metabolism control (MC), the developmental power (DP), and the reproductive power (RP). These, then, are the four basic vegetative powers. They must be added to the four inorganic powers we have already enumerated to provide a total of eight powers to account for all the activities of a plant form.
Link to diagram 4.1
home.comcast.net/~icuweb/WAW0018.GIF
Figure 4.1 diagrams the powers model of a plant nature. Like that for an inorganic nature, it starts with a point source, labeled PM for protomatter, as heretofore. This is surrounded by an energizing field that radiates from it and constitutes the plant organism – now labeled NFp, for natural form, with the subscript “p” designating plant. Within that field, as before, the eight powers are arranged symmetrically, but also hierarchically, with the inorganic powers in the lower hemisphere, the organic powers in the upper.
Notice the up and down arrows on either side of the letters PM, connecting the two sets of powers and showing the interchanges between them. These have a slightly different function from the arrows we have used previously in the inorganic model. Our earlier use of arrows represented activities that originate or terminate outside the substance being modeled and on this account are called transient actions. As opposed to them, the up and down arrows on either side of the PM designate immanent actions, those that remain within the plant and are perfective of it. Plants also initiate a few transient activities, as can be seen from the single arrow emerging from the reproductive power, when it produces seeds and brings into being a new organism of its own species. Also the two reciprocating arrows attached to the box for homeostasis show that it controls environmental reactions with substances that exist outside the plant.
The function of the plant form NFp with respect to the inorganic powers in the lower part of the model is obviously different from that of the inorganic form NFi in the non-living. The atomic and molecular structures these powers control are now part of the plant, and they are regulated by the form (mainly through its metabolism power, MC) to meet the energy requirements of the plant’s life. The natural form NFp further determines the way in which this nutritive energy is used, through its developmental power DP, controling the distinctive patterns in which the plant grows and stops growing. And finally, the natural form channels energies of the adult form, over and above those required to sustain its own life, through its reproductive power (RP), for the generation of new organisms.
As in the case of inorganic natures, the generic power form is not sufficient of itself to model a specific plant nature. To this has to be added iconic models that portray in detail plant structure and functioning. These are different, for example, in algae, fungi, mosses, and vascular plants. Each of these phyla has its characteristic root, stem, and leaf systems, and uses them in various ways for transpiration and reproduction. These have been understood and sketched by botanists for centuries, but with the development of biochemistry in recent decades, much more is known about metabolism and replication. Graphic modeling techniques make these life processes interesting and intelligible even to those who have little formal education in the sciences that specialize in them. "
home.comcast.net/~icuweb/c02000.htm
As you can see, the physical constituents ( i.e. the atoms, etc. ) are govenned by the nature of the plant. I recommend that you study this course, it is quite simple, by comparison to reading A or T. and some of their modern descendents.
Happy reading.
Linus2nd