We humans are not sometimes using ideas such as substances, natures and things; we are using them all the time every day, most people probably not even aware of it.
By “sometimes”, I mean that we don’t, for instance, say that Android is a different substance to Windows, or, except perhaps when trying to be poetic, Neptune has a different nature to Uranus. The substances/natures model doesn’t apply universally.
Ideas are how we communicate with each other and understand the world around us as well as gain scientific knowledge of things. For example, individual trees, dogs, cats, horses, people are all paradigm examples of substances. If one asks oneself if oak trees are real, I suppose he/she would have to ask themselves if they encounter an oak tree in a park, whether that oak tree exists or not outside their minds.
I don’t mean anything soliphistic. Oak trees and cats exist alright, the issue is whether they are different substances.
Inside our heads, we recall one set of memories if we think of oak trees, and another set if we think of cats, and we may also, inside our thoughts, make a distinction between cats in general or one particular cat we have known.
That much is agreed, and if Aristotle wants to label those different bundles of impressions inside his head “substances” and “natures”, fine. The issue is the claim that because the ideas of “substances” and “natures” exist inside his head, they must necessarily exist outside his head.
Aquinas would argue that ideas must conform to external reality to be true. We don’t invent ideas but we gather knowledge of external things outside our intellects through our senses and through the external things themselves. This teaching is in accord with sound reasoning and experience, it is undeniable. For example, how would you describe colors to a person blind from birth?
But clearly that’s not true. Having the idea of Harry Potter doesn’t make Harry Potter real. And many cultures make no distinction between what we call blue and green, or instead make distinctions by saturation or brightness, so their idea of what colors conform to reality differs from ours.
On theological grounds alone, I’d argue that the idea of plural natures is a pagan hangover and plain wrong. God created one single nature, not many. Science confirms that both oak trees and cats are made of cells, and the cells are made of the same chemicals - their substance is much the same and they both come out of the same nature, the one nature created by the one God.
Well, is your head real? Is your intellect or are your thoughts real? You can’t prove with the physical sciences the immaterial. The immaterial is outside the scope of the physical sciences. Immaterial ideas and concepts do exist though, we are all famaliar with them and they come from somewhere. Knowledge of universal ideas are what made Plato posit the immateriality of the intellect
Which again argues that the substances/natures model can only possibly exist as ideas inside our heads, as a classification scheme, one amongst many others.