Is Darwin's Theory Of Evolution True? Part Two

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Can’t disagree. It’s more complicated but yes. Again, we are careful not to feel the effect of random physical activity on DNA. That’s why doctors prod, poke and put us in very complex machinery. To ensure that if it happens it’s caught early.
 
Your assuming that my mind isn’t focused on the truth. And to say that scientific truth is wrong headed is short sighted at best.
 
I’ve explained it before. If the message didn’t come across, I’m not sure I can do a better job of it right now. I wasn’t trying to convince you but tell you how I see things. I understand what you are saying, but we see things differently at a fundamental level.
 
It a scientific fact as valid as that which said the heavens revolve around the earth.
 
Science gone askew, attempting to define a person, that being a philosophical, religious question, has made a pronouncement as to what is a human being. This is done purely on a morphological level - the appearance of their bones and features of their genome. Be aware that this counts against the materialist creation story which forms the mythos of our times.
 
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There is no really good theory of mind at all, and a complete inability for us to observe the mind. And yet-- the mind is the most important aspect of my existence as a human being.
I would agree that there are no good theories. However, to say a lot has been written about the mind, would be an understatement.

On the one hand, I would agree we cannot observe the mind, on the other, we are the mind and it’s workings can be teased out through self-reflection.

While an evolution of perception, emotion and behaviour has been described, this dimension which you identify as the most important aspect of your existence, doesn’t fit with the materialist basis of the standard theory of evolution. It’s usually replaced by descriptions of neurological and strictly behavioural differences.

As an aside, this facilitates the use of laboratory animals as merely examples of physiology and biochemistry, and treating them as such reinforces this view if them. This then unfortunately for us, gets projected onto ourselves.

The existence of mind, which reflects life itself, by it’s absence is one more flaw in evolutionary theory.
 
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I agree. Even if you can show the evolution of the brain, and identify how damage to or stimulus of each brain part can affect conscious experience, you cannot show why it is that matter, which is not normally considered to be intrinsically sentient, develops the capacity for subjective experience.

Material monists will generally wave through the brain, ask you what will happen if they club you in the head, etc. But none of this demonstrates why there is subjective experience rather than a total lack of it.
 
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To the OP, the theory that explains your fish’s appendage evolution is the theory of ‘scaffolding’.
What ‘scaffolding’ means is that a much larger structure was originally in place, perhaps a mass of cells some of which would sometimes light up, that over time was refined into only the portion that were actually beneficial for survival.

It’s a good question and shows that we do not believe that somehow the adaptation could ‘predict the future’ and say build up a stalk, then slowly curve it downward, then add the light at the end. I believe that is the heart of your question.

But if scaffolding occurred then we have a very different sequence of events. First a massive structure was created that in some occurrences had light emitting cells (many biological materials can emit light) and that this gave some advantage by luring in a meal.

The refinement into what you see however took a long time and happened by removing the portions of the structure that were not helpful or slightly harmful (too much extra mass to carry around). And I suspect that at some point the ability to move and swing that light source around gave a big advantage for luring in a meal.

Scaffolding is a valid biological concept, but further can be applied to any iterative design process. Evolution is just a description of how things change over long periods of time where there is scarcity of resources, and thus survival advantages can impact the direction of form into the future.

Darwin intended the ‘Origin of Species’ as a way to explain how life forms seem to exist in so many diverse forms, filling specific niches, thus having ‘specialization’. So evolution is the study of the dynamics of this specialization process. It is valid for many things other than just biological ones and is actually simple common sense.

For example, why is it that all of the furniture one finds at the antique store so well made? The answer is that all of the poorly made stuff isn’t around for you to see.

It is unfortunate that some take the ‘Origin of Species’ to mean the origin of all life. Perhaps that is just an unfortunate ambiguity of the English phrase. But Darwin was clear when he described that evolution is the theory of the process of how life changes, but does not explain the origin of life itself.

Evolution takes the existence of life for granted and just explains the process of change.

Evolution is just like the process of furniture making it into antique stores. We can see how over time only the well made and durable pieces can survive the process of being used and transported for over a hundred years. But this process in no way claims to explain how furniture itself comes about.
The point was… how did this fish survive if it had to wait around for millions of years for its lighted fishing lure to develop and evolve.
 
Junk DNA is a presumption that is not true.
True, that’s why I put it in quotes and put non-coding in parentheses right after it. The point I was making was not that that part of DNA actually was junk, but that science really doesn’t understand it very well, and given that it is 98% of the structure, that speaks to a rather thin understanding of how DNA works.
 
No only did the moths adapt a darker coloration that matched the industrial pollution, they reverted back to their previous color when that pollution was removed from the environment.
I never understood why this was used as an example of evolution since it doesn’t seem the moths had in fact evolved. There have been a very large number of experiments done with fruit flies, with researchers selecting for one characteristic or another and breeding only the flies that most strongly exhibited the trait they were looking for.

They have been able to drive the population very far in one direction, but when the selection pressure was removed the flies returned to normal distributions within five-ish generations. That is, the flies had not evolved at all. It appears all that has been demonstrated is variability within the species. The study of the moths appears exactly the same, only it was the birds that were selecting for a particular characteristic. Again, once the selection pressure was removed the moths returned to their standard distribution of coloration.
 
The bottom line is that insofar as what i said in the post that you responded to, the Cardinal has indirectly affirmed that it is not against church teaching by saying it might be true.
I pointed this out before: the issue is not with the concept of evolution but with its mechanism. That is, the church can accept some forms of evolution, but not neo-Darwinsim as it is commonly presented.

“Evolution in the sense of common ancestry might be true, but evolution in the neo-Darwinian sense – an unguided, unplanned process of random variation and natural selection – is not. Any system of thought that denies or seeks to explain away the overwhelming evidence for design in biology is ideology, not science.”

It is simply wrong to suggest that because the church accepts the possibility of evolution that she also accepts Darwinism.
 
It is unknown whether the mechanism by which flagella reappeared was anything like the mechanism that developed flagella in the first place.
According to the researchers, they do know how the flagella were re-created:

Remarkably, this happened because the mutants had rewired a cellular switch, which normally controls nitrogen levels in the cell, to activate the flagellum.
There is every reason to believe that our artificial gene editing did not fully erase the fruits of millions of years of evolution in “destroying” the capability to make a flagella. Rather we likely just disabled a simple switch and the cell either evolved or just used a pre-existing repair mechanism to re-establish the flagella. It would be unwarranted to assume that this repair of a switch was just as difficult as the initial evolution of the flagella.
Darwinism relies on two assumptions: randomness and time, neither of which seemed involved in the mutations of the bacteria in this experiment.
 
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LeafByNiggle:
It is unknown whether the mechanism by which flagella reappeared was anything like the mechanism that developed flagella in the first place.
According to the researchers, they do know how the flagella were re-created:

Remarkably, this happened because the mutants had rewired a cellular switch, which normally controls nitrogen levels in the cell, to activate the flagellum.
This is just another way of saying what I said - the connection to the information was repaired. It is still not the same thing as evolving a complex mechanism in the first place. So the fact that it took place in a short period of time does not prove the info for flagella did not evolve slowly.
There is every reason to believe that our artificial gene editing did not fully erase the fruits of millions of years of evolution in “destroying” the capability to make a flagella. Rather we likely just disabled a simple switch and the cell either evolved or just used a pre-existing repair mechanism to re-establish the flagella. It would be unwarranted to assume that this repair of a switch was just as difficult as the initial evolution of the flagella.
Darwinism relies on two assumptions: randomness and time, neither of which seemed involved in the mutations of the bacteria in this experiment.
Which is fine because what this experiment is illustrating is not evolution, nor is it an alternate explanation for evolutionary changes. It is just a demonstration of a genetics repair mechanism.
 
The anglerfish has a specialized illuminated fishing lure that it uses to attract prey… how did the anglerfish survive waiting for evolution to evolve this lure ?
How did Silcon Valley survive waiting for Bill Gates to come along?

Really…survival does not work the way you imply.
 
I never understood why this was used as an example of evolution since it doesn’t seem the moths had in fact evolved. There have been a very large number of experiments done with fruit flies, with researchers selecting for one characteristic or another and breeding only the flies that most strongly exhibited the trait they were looking for.

They have been able to drive the population very far in one direction, but when the selection pressure was removed the flies returned to normal distributions within five-ish generations. That is, the flies had not evolved at all. It appears all that has been demonstrated is variability within the species. The study of the moths appears exactly the same, only it was the birds that were selecting for a particular characteristic. Again, once the selection pressure was removed the moths returned to their standard distribution of coloration.
Yes, mutations happen all of the time and populations would naturally gain or lose mutations depending on the fate of individuals born with them. That’s kind of the whole point of his theory.

I do not see how anyone can say the absence of a demonstrated mechanism by which a population changes how many chromosomes it has and comes out the other side as a stable breeding population is not a valid reason to at least say the theory of evolution is not complete yet. Of course it is not; biologists and biochemists are still looking for these mechanisms. (There is no reason to believe there is just one.)

Those who flatly say it cannot be true also have a problem, though: What is their suggestion for what are known as vestigial organs or structures? Why do populations change their characteristics in a short amount of time in response to breeding pressures brought about by environment? Why is it impossible that this be the source of vestigial organs? What is their better explanation for the observations that Darwin was trying to explain?_

You cannot just come in, say, “I don’t believe that theory” and then go a hundred years without coming up with anything but a black box “a miracle occurs” explanation. That isn’t biology. That isn’t science. If you have a better and a testable hypothesis, by all means say what it is. It is on you to get into the arena and show why your hypothesis is a better explanation of known data and therefore deserves to be the accepted theory.

Is it possible that all the theories are wrong and scientists just found useful memory devices for remembering the patterns of how the physical world works, rather than real explanations? Well, of course it is possible. If you can’t even come up with a memory device that is in the least bit useful even in remembering the data that is known, however, you don’t have much scientific room to look down on those who are actually trying to come up with physical explanations of humankind’s observations of the world around us.
 
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If that were true then you could do the same thing with Superbacteria that we do with insecticides-- remove certain ones from the rotation for a while until the bugs no longer have a resistance to them.

I don’t know about the fly experiments. If you wouldn’t mind, please link them. However, I suspect that their normal state was for some reason more efficient or beneficial, and that’s why they reverted. Also, there’s the basic stuff we learned in school about dominant and recessive genes and so on. Basically, take those flies and keep that environmental factor for a very long time, and I’d reckon that any changes in them would “stick.”
 
The point was… how did this fish survive if it had to wait around for millions of years for its lighted fishing lure to develop and evolve.
That fish wasn’t there yet. All that had to survive and reproduce were that fish’s ancestors. Those ancestors were not the same as the modern Anglerfish.

rossum
 
This is just another way of saying what I said - the connection to the information was repaired.
The normal mechanism for building a flagellum was destroyed, and that path was not repaired. An entirely different path was constructed that actually consisted of co-opting a switch used for an entirely different purpose. It would be like your car blowing the fuse to the starter, and rewiring itself so it could use the fuse to the radio.
It is still not the same thing as evolving a complex mechanism in the first place. So the fact that it took place in a short period of time does not prove the info for flagella did not evolve slowly.
Of course it doesn’t prove anything regarding the evolution of flagella. It does, however, provide evidence that Darwinian evolution has a lot of 'splainin to do.
It would be unwarranted to assume that this repair of a switch was just as difficult as the initial evolution of the flagella.
What seems even more unwarranted is to assume that such a restoration of function could occur randomly in four days.
Which is fine because what this experiment is illustrating is not evolution, nor is it an alternate explanation for evolutionary changes. It is just a demonstration of a genetics repair mechanism.
This is the kind of argument that led to my suspicions about the inadequacies of Darwinism. On the one hand we are told that English moths demonstrate evolution because when the white ones are removed we are left with a predominance of black ones, even though the coloration returns to normal when the selection pressure is removed. But on the other hand we are told that when one generation of bacteria is genetically incapable of growing flagella, and the next generation grows them, that this is not an example of evolution.

That is, the moth DNA is not different between generations but this still demonstrates evolution, and even though the bacterial DNA is different between one generation and the next this is not an example of evolution.
 
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The normal mechanism for building a flagellum was destroyed, and that path was not repaired. An entirely different path was constructed that actually consisted of co-opting a switch used for an entirely different purpose. It would be like your car blowing the fuse to the starter, and rewiring itself so it could use the fuse to the radio.
In your analogy, that would still be a lot easier than building a starter from scratch. I don’t know what you mean by the “normal path.” Darwinian evolution does not speak about paths. It does speak about information that gets inherited. And that is the hard part. That is what takes millions of year to evolve. Finding a different “path” to the information that evolved and was still sitting there in the genetics is not the same thing as developing that information in the first place. The researchers have no way of knowing for sure that they destroyed all traces of the flagella blueprint. What happened in a few days was significantly different from what the bacteria did over millennia.
Of course it doesn’t prove anything regarding the evolution of flagella. It does, however, provide evidence that Darwinian evolution has a lot of 'splainin to do.
Not at all. Darwinian evolution makes no claims about how this particular experiment should have turned out.
What seems even more unwarranted is to assume that such a restoration of function could occur randomly in four days.
It is not an assumption. It is an observed fact. So of course it is warranted. It was somewhat surprising. So
what?
This is the kind of argument that led to my suspicions about the inadequacies of Darwinism. On the one hand we are told that English moths demonstrate evolution because when the white ones are removed we are left with a predominance of black ones, even though the coloration returns to normal when the selection pressure is removed.
That is evolution on a very small scale because the changes are brought about by selection pressure, and the information on how to build both black and white coloration had already evolved eons ago. The selection pressure does not need to build up a complicated structure from nothing, so it is not surprising that the results occur in short order.
But on the other hand we are told that when one generation of bacteria is genetically incapable of growing flagella, and the next generation grows them, that this is not an example of evolution.
This is not evolution because the result was achieved through direct gene manipulation and not through selective pressures.
That is, the moth DNA is not different between generations but this still demonstrates evolution…
If the information that selects between black or white colors is not in the DNA, it is in some other part of the genetic inherited structure. Darwinism does not say that everything has to go through the DNA specifically. Darwin didn’t know about DNA. But the distinction between that experiment and the flagella experiment is that the later used gene editing rather than selective pressures.
 
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