So, when the distance between atoms is relatively large, each one of them becomes a substance. But if they approach each other, there is a critical distance for which each one of them loses its individual form, and then they become together a different substance because they acquire another form. Again, there is another critical distance for which the gaseous form is lost and a liquid form is acquired (As I said before, there are states -defined by a range of temperatures and pressures-, for which you cannot say if the “thing” is a liquid or a gas. Can it be that it has both forms simultaneously?). And there is a third critical distance for which the liquid form is lost and a solid form is acquired. But there is a lot of dynamics between phases. Let’s consider, for example the triple point for water, in which solid, liquid and vaporous water are in thermodynamic equilibrium. Water molecules in one phase travel incessantly to another phase. What happens to them “individually” (I guess you would not use this term, because -to be consistent with what you have said- it would be only the gas or the liquid, or the solid, which have a form and, therefore, are individuals, but not the molecules…, still…)? What happens in the interphases, where the exchange takes place and where, in consequence, you cannot say if a molecule “participates” of the form of the solid, or of the liquid or of the vapor?
Also, we could have, for example, hydrogen gas in a small vessel; the solid wall separating it from the atmospheric air. Then, we slightly open a valve to slowly release it into the air. We will have a mix phase of hydrogen and air (you know, nitrogen, oxygen…) and a concentration gradient in the surroundings of the valve, which will be gradually decreasing until the equilibrium is reached. How many aristotelian substances would be there, during the development of the concentration gradient?