Descartes did not deny that “I am therefore I think”, but in the movement of his argument he said “I am thinking, therefore I know I exist”. He did not say his thinking caused his existence. Descartes spoke of the soul phenomologically, as experienced. He didn’t address whether technique-ly the sensible soul was really just the intellectual soul in action. He wasn’t concerned about that.
There is no concept of a sensitive soul in Descartes like that found in Aristotle and the scholastics. Descartes does speak of sense organs in animals and in the body of humans but this is nothing other than matter in motion. This follows from his own philosophical principles. What I find odd among many other things in Descartes’ philosophy is that the substance of all corporeal, material things is the same. This substance is body or extended matter. Things differ only accidentally such as their geometrical shapes, sizes, and figures which Descartes calls modes of extended substance. Thus, a tiger and an oak tree are the same substantially but differ only accidentally according to the various modes of extended substance such as magnitude, figure, and various movements or motions in their bodies or bodily parts. Descartes identified matter with quantity or extension. The essence of matter is spatial extension. Quantity or extension is an accident of substance and matter in Aristotle/Aquinas. Using Descartes’ own method of doubt, I find his idea of the nature and essence of corporeal substance highly doubtful and even erroneous in light of the Aristotlelian/Thomistic metaphysics.
Another oddity in Descartes philosophy is that color, smell, taste, sound, and light are not in external things. These qualities are nothing in external things “but the various dispositions of these objects which have the power of moving our nerves in various ways.” They are “nothing more, as far as is known to us, than certain dispositions of objects consisting of magnitude, figure, and motion.” Thus these “secondary” qualities exist in us as sentient subjects rather than in external things. Galileo was apparently of like mind. These qualities are subjective which means they only exist in our mind as ideas. For example, corporeal movements stimulate the senses, and on occasion of these movements the mind produces its idea of color. I was thinking about this yesterday as I took a walk in a local park which has a lot of sycamore trees with large green leaves. My senses tell me unmistakeably that the leaves are green and that the color green is in the leaves. When I’m 30 feet away from the tree, the tree and its green leaves are over there and I’m here. To suggest that the leaves are not actually green themselves but that the color green is only in my mind, I find to be absurd. This idea that colors, smells, tastes, light, ect, are only in our minds means that when we see beautiful sunsets, the colors we see are not actually out there in the sunset but only in our mind; or when we see a tiger with orange and black stripes, the tiger is not actually colored but is pretty much some kind of geometrical figure without color. The light we see from the sun is only in our head. All of this is absurd beyond recognition.
I would agree with Descartes and Galileo that color is not matter. But I hold it to be an accident or form in a substance and not just in our heads.
Emphasizing words like “mechanical machines or automata” are missing the point about animals too: all Descartes was saying was that the animals were biological-physical, and we partly spiritual.